[,GenomicTiles,GRanges,ANY,ANY-method

[[,GenomicTiles,numeric,ANY-method

An integer (for '[[') or a <code>GRanges</code> object (for '[')

This package allows statistical analysis of genome-wide
data with smooth functions using generalized additive models
based on the implementation from the R-package 'mgcv'. It
provides methods for the statistical analysis of ChIP-Seq data
including inference of protein occupancy, and pointwise and
region-wise differential analysis. Estimation of dispersion and
smoothing parameters is performed by cross-validation. Scaling
of generalized additive model fitting to whole chromosomes is
achieved by parallelization over overlapping genomic intervals.

[[,GenomicTiles,numeric,ANY-method: Providing pseudo-list functionality

Description

Usage

Arguments

Value